One thing you're fogetting is the same thing most reasonably intelligent people forgot about the matrix films when they bagged them out as well. The films show nothing new or really groundbreaking, this is true, but what does make them groundbreaking is the target audience.
Both V and the Matrix trilogy targents a mass general audience, and in doing so introduces many themes to the public consiousness that isn't generally around before.
When judging the intellectual merits of such films, one needs to think like the average movie goer, in other words, minus 20 or so IQ points from one's own.
I'm just glad such generally challenging films are being made.