Okay, so sorry this is a huge post, but hopefully some of you will find something you like!
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http://store.shopbop.com - collective of better to high end designers, ie Juicy, LAMB, etc.
www.bust.com - feminist apparel and whatnot
http://www.dirtydixie.com/index.htm - indie designer with vintage/ reconstructed clothing and housewares
http://www.rippednylons.com/ - handmade pins
http://www.stitchpixie.com/ - indie designs with 10% of proceeds to charity; some of these items are so cute!
www.plainmabel.com - indie designer for accessories
www.virginthreads.com - collective of indie labels
http://www.shawnimals.com/shop.php - this guy makes the cutest toys
www.jeeonline.com - vintage-style, girlie-wear
www.individualfashion.com - site has a few “coming soon”’s, but interesting pieces nonetheless
www.fabucci.com - swimwear
www.thefashionpulse.com - collective of expensive indie designers
www.elsewears.com - compellation of several indie designers for all categories
http://www.craftersforcritters.com/ - proceeds go to greyhound rescue; several indie designers for all categories
http://www.postlapsaria.com/ - indie designer for clothes, etc.
http://www.glamourpussshop.com/ - collective of indie designers * it says closed, but when you on clothing, it takes you right to the shopping page)
http://www.anezkahandmade.com - indie designer for clothes, etc.
http://supayana.com/ - indie designer who sells her items on eBay. She has 100% positive feedback and her shirts are awesome.
http://www.faeriesmak.com/ - indie designer for clothes, etc.
http://www.texashautesauce.com/ - indie designers for some amazing accessories
http://www.divatribe.com/catalog/index.php - collective of indie designers and their products
http://www.ripevintage.net/ - vintage clothing found at estate sales, etc.
http://www.kewlfinds.com/ - collective of indie designers and their products
http://www.pinkthread.com/ - indie designed accessories, etc.
http://www.copacetique.com/ - indie designs offering different products, but I like their “apartment life” items.
http://www.cutxpaste.com/ - collective of indie designers and all their products
http://www.beccalou.com/ - indie designed accessories * they have personal ad jewelry; one reads “I’m not getting any and it sucks”*
http://www.kapow-boutique.com - people send their own designs in for sale; offers unique tee’s
http://store.catbirdnyc.com/ - a little expensive indie designs containing mostly accessories
http://www.mshopnyc.com/ - unique, expensive designs
http://www.intermixonline.com - very expensive, however interesting designs
www.angelajohnsondesigns.com - this is actually my Survey of Fashion teacher’s designs. They are awesome
http://www.kontriveshop.com/ - Arizona based site offering several designers and products
www.paper-doll.com - Canadian based site offering some awesome designs
www.styledose.com - collective of better end but lesser known designers
www.spira-anima.com - Canadian based site offering great designs
www.girlshop.com - on the high-end, but offers what the celebrities are wearing
www.bluemarlin.com - vintage sportswear
www.shopintuition.com - on the high-end, but offers what the celebrities are wearing
www.shopkitson.com - on the high-end, but offers what the celebrities are wearing
www.amiciaccessories.com - reasonably priced purses and handbags
www.ravinstyle.com - on the high end, but lesser known designers
www.freepeople.com - better end, vintage inspired wear
www.windsorstore.com - company offering reasonably priced clothing
www.candccalifornia.com - offers a bit pricey but super-comfy plain tops and bottoms
www.shopbluegenes.com - offers what the celebrities are wearing
www.anthropologie.com - pricey vintage, girlie-wear
www.heyotsu.com - vegan clothing
www.labellosangeles.com - collective of Los Angeles based shops and designers
www.revolveclothing.com- offers what the celebrities are wearing
www.spacemermaid.com - awesome accessories
www.lisakline.com- on the high-end, but offers what the celebrities are wearing
http://www.traceyross.com/main.html - high-end designer who dresses celebrities, items are expensive
www.fredflare.com - collective for indie designers
http://www.luvcharlie.com/- offers what the celebrities are wearing