I'd be happy to hear your criticisms. If there's even credible doubt about something on my site, I'll take it down or qualify it.
There's no evidence of that. Oh, you mean the direct injection into the brain experiment?
You're ignoring the confound of body temperature. MDMA neurotoxicity is largely a function of elevated body temperature, most likely due in part to metabolic impairment leading to membrane depolarization, inducing nitric oxide synthase (in my outdated opinion, of course.

Localized injections into the brain are very unlikely to cause the sort of core body temp increases seen from systemic administration. But, the silly people have just gone chasing off after this red herring for years, never looking back, never bothering to wonder if the data actually supported the conclusions. (Data rarely lies, but people fuck up the interpretation all the time. For instance, Nichol's 'dopamine toxicity' conclusions have been disproven, but his data is still interesting and useful.)
That one highly suspect study is essentially the entire basis of the enthusiasm for the 'toxic metabolite' theory. Neurotoxicity is a very common (if not universal) quality of amphetamines. That a novel amphetamine produced in the liver from a known amphetamine is still neurotoxic doesn't even merit a raised eyebrow, yet they swing that dead cat around by the tail as if they have cracked the case.
Oh, If only we could find a molecule that is dependent on the SERT to enter the serotonin axon! Like MDMA is. If only we could find a molecule that has a significant affinity for MAO-B. Like MDMA does. If only we could find a molecule that is attacked at the amine within brain tissue. Like MDMA is. Boy, there just aren't any good candidates. Yes, I know. MAO doesn't attack amphetamines. Everybody knows that. And that's the problem; conventional wisdom has become unassailable dogma.
Consider the problem: What could stop MAO from attacking an amphetamine when phenethylamine is an ideal substrate? Well, there are always steric problems; change the shape/size and you may no longer get a significant retention of the substrate or proper positioning against the catalytic group. But adding an alpha-methyl, N-methyl isn't much of a change, and we know experimentally that MDMA still has a significant affinity for MAO. The other problem is changes in electron density; for instance, chlorinate a hydrocarbon and it becomes harder to further oxidize. Yet, MAO rips through the tertiary amine of DMT as if it were nothing, so both the steric and electron donating/withdrawing effects of a couple methyl groups probably aren't an absolute barrier.