tryp2fun
Bluelighter
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Exploring Chemical Space for Drug Discovery Using the Chemical Universe Database
Jean-Louis Reymond* and Mahendra Awale
Department of Chemistry and Biochemistry, University of Berne, Freiestrasse 3, 3012 Berne, Switzerland
ACS Chem. Neurosci., Article ASAP
DOI: 10.1021/cn3000422
Publication Date (Web): April 25, 2012
Herein we review our recent efforts in searching for bioactive ligands by enumeration and virtual screening of the unknown chemical space of small molecules. Enumeration from first principles shows that almost all small molecules (>99.9%) have never been synthesized and are still available to be prepared and tested. We discuss open access sources of molecules, the classification and representation of chemical space using molecular quantum numbers (MQN), its exhaustive enumeration in form of the chemical universe generated databases (GDB), and examples of using these databases for prospective drug discovery. MQN-searchable GDB, PubChem, and DrugBank are freely accessible at www.gdb.unibe.ch.
The authors estimate in this paper that there are about 1060 possible drug small molecules that can be synthesized. Only about 60 million chemical compounds have been synthesized so far. The number of possible drugs is larger than the number of stars in the known universe. Even if only 1% of them are psychoactive, that should keep Congress and the DEA busy for quite a while writing new drug laws.
