I should have been more specific... what I meant was, binding affinities are not synonymous to potency. There are ligands with high binding affinities which have low potency or efficacy.
Right. Efficacy is unrelated to affinity. High efficacy, close to 100% means the drug is an agonist, lower efficacy a partial agonist, no efficacy an antagonist, negative efficacy, an inverse agonist (I think I have this last one right, please correct if I'm wrong).
Buprenorphine has high affinity but reduced efficacy. It's still a pretty potent drug though, substantially more potent than morphine, even with reduced efficacy.
Yeah cocaine is a puzzling molecule, in the viewpoint of the PEA model. Sure, phenylpropylamines are understandable since they're only 1 more carbon. But cocaine actually has an ester group between the aryl and amine. Which also gives it local anaesthetic properties. Anyway that's 5 atoms between the phenyl and the amine, which goes to show DA transporter is not very picky as to it's ligands...
I don't think there's really a phenethylamine "model" for DAT inhibitors. There are definitely lots of phenethylamines that are DAT inhibitors, but an amine group seperated from an aromatic group by two carbons happens to work out pretty good, making for a wide range of PEA derivatives with DAT affinity.
With Cocaine, Clofencyclan, Dimethocaine and GBR12935, energy minimized, an amine group is roughly in the same location relative to the aromatic group.
I've taken these groups, plus BTPC, MM2 minimized, and measured the distances of amine to carbons of the aromatic ring, to the H-bond acceptor, and the distances from H-bond acceptor to the carbon atoms of the aromatic ring. They're all pretty close (I haven't finished all the math yet) but there's obviously a bit of deviation, as most of these are fairly flexible.
But then again, the amine isn't even a requirement. Analogues of cocaine and methylphenidate with the amine replaced by carbon or oxygen atoms are known and active and have fairly high affinities. I don't know if it's really promiscuity or just misunderstanding on our part of how the molecule is actually binding. Is the amine actually taking part in H-bonding or salt bridge formation, or is it just space filling? With DAT inhibitors it seems that it's just space filling.